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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
3
ChIP-seq
3
DNase-seq
1
Hi-C
1
pCHi-C
Assay category
3
DNA accessibility
3
DNA binding
1
3D chromatin structure
Target of assay
3
histone
3
histone modification
2
narrow histone mark
1
broad histone mark
Date released
3
August, 2021
3
June, 2019
1
February, 2021
1
July, 2019
Available data
397
bam
382
fastq
360
bigWig
331
bed narrowPeak
312
bigBed narrowPeak
61
bed broadPeak
61
bigBed broadPeak
20
tsv
16
tagAlign
8
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
1
bed bed3
1
bedpe bed3+
1
hdf5
1
hic
1
vcf
Organism
8
Homo sapiens
Biosample type
tissue
7
primary cell
1
cell line
Organ
21
connective tissue
21
epithelium
10
kidney
8
brain
8
vasculature
7
liver
6
blood vessel
3
embryo
3
heart
2
pancreas
2
vein
1
eye
1
musculature of body
Project
8
AMP
Genome assembly (visualization)
8
hg19
6
GRCh38
Lab
8
AMP-T2D consortium
biosample_type!
tissue
BIOSAMPLE
ASSAY
8 results
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ChIP-seq
DNase-seq
Hi-C
pCHi-C
primary cell
hepatocyte
3
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
retinal pigment epithelial cell
1
cell line
HepG2
1
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