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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
513
ChIP-seq
159
total RNA-seq
9
DNase-seq
3
ATAC-seq
3
small RNA-seq
1
Hi-C
1
WGBS
1
pCHi-C
Assay category
513
DNA binding
162
Transcription
12
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
327
transcription factor
102
control
82
recombinant protein
81
histone modification
80
histone
58
RNA binding protein
51
narrow histone mark
29
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
314
November, 2017
193
May, 2020
63
December, 2017
53
November, 2018
26
August, 2017
9
June, 2019
8
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
4
August, 2021
2
February, 2021
1
March, 2020
Available data
688
bam
628
bigWig
474
bed narrowPeak
465
fastq
364
bigBed narrowPeak
179
tsv
86
tagAlign
67
bed broadPeak
67
bigBed broadPeak
17
bed bed3+
4
bed bedMethyl
4
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
690
Homo sapiens
Biosample type
367
cell line
291
tissue
17
primary cell
15
in vitro differentiated cells
Organ
690
pancreas
683
liver
600
connective tissue
442
adipose tissue
319
epithelium
246
brain
211
heart
187
vasculature
182
blood vessel
144
kidney
114
limb
102
artery
66
bone element
60
blood
60
bodily fluid
58
musculature of body
42
nerve
36
embryo
24
spleen
20
vein
18
ureter
8
skeleton
7
eye
1
pericardium
1
pituitary gland
Project
690
AMP
Genome assembly (visualization)
593
hg19
537
GRCh38
Lab
690
AMP-T2D consortium
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
BIOSAMPLE
ASSAY
690 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
small RNA-seq
Hi-C
WGBS
pCHi-C
cell line
HepG2
359
5
1
1
1
tissue
liver
122
147
2
1
right lobe of liver
10
2
1
1
2
retina
3
primary cell
hepatocyte
4
5
1
retinal pigment epithelial cell
3
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
in vitro differentiated cells
hepatocyte
15
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