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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
DNase-seq
3
ChIP-seq
2
Hi-C
Assay category
19
DNA accessibility
3
DNA binding
2
3D chromatin structure
Target of assay
3
histone
3
histone modification
2
narrow histone mark
1
broad histone mark
Date released
17
June, 2019
3
August, 2021
2
July, 2019
2
October, 2019
Available data
320
bam
304
bigWig
257
fastq
169
bed narrowPeak
159
tsv
80
zippedFastqFolder
79
bigBed narrowPeak
25
bed broadPeak
25
bigBed broadPeak
24
bed bed3+
7
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
24
Homo sapiens
Biosample type
21
primary cell
3
tissue
Organ
78
kidney
36
limb
35
brain
34
musculature of body
30
heart
29
pancreas
27
connective tissue
21
epithelium
18
ureter
13
liver
13
vasculature
11
blood vessel
6
adipose tissue
4
artery
4
eye
3
embryo
2
nerve
2
vein
1
spleen
Project
24
AMP
Genome assembly (visualization)
22
GRCh38
18
hg19
Lab
24
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
BIOSAMPLE
ASSAY
24 results
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DNase-seq
ChIP-seq
Hi-C
primary cell
hepatocyte
1
3
brain microvascular endothelial cell
1
1
endothelial cell of umbilical vein
2
glomerular visceral epithelial cell
2
kidney tubule cell
2
+ See 9 more…
tissue
retina
3
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