Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ChIP-seq
5
DNase-seq
1
Hi-C
1
pCHi-C
Assay category
64
DNA binding
5
DNA accessibility
1
3D chromatin structure
Target of assay
46
transcription factor
17
histone
17
histone modification
9
broad histone mark
8
narrow histone mark
4
RNA binding protein
4
chromatin remodeller
1
control
1
other context
1
other post-translational modification
Date released
58
November, 2017
3
August, 2017
3
August, 2021
3
November, 2018
2
June, 2019
1
February, 2021
1
July, 2019
Available data
681
bam
622
bigWig
465
fastq
441
bed narrowPeak
358
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
71
Homo sapiens
Biosample type
59
cell line
6
primary cell
6
tissue
Organ
78
kidney
71
liver
50
brain
47
musculature of body
43
pancreas
36
limb
30
heart
29
connective tissue
27
epithelium
19
vasculature
18
ureter
15
blood vessel
7
adipose tissue
4
artery
4
eye
4
vein
3
embryo
2
nerve
1
spleen
Project
71
AMP
Genome assembly (visualization)
71
hg19
55
GRCh38
Lab
71
AMP-T2D consortium
Audit category:
13
inconsistent control read length
BIOSAMPLE
ASSAY
71 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
Hi-C
pCHi-C
cell line
HepG2
58
1
primary cell
hepatocyte
3
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
tissue
liver
3
2
right lobe of liver
1
Download