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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
169
total RNA-seq
6
ChIP-seq
5
DNase-seq
3
pCHi-C
3
small RNA-seq
1
Hi-C
Assay category
172
Transcription
6
DNA binding
5
DNA accessibility
1
3D chromatin structure
Target of assay
3
histone
3
histone modification
2
narrow histone mark
2
transcription factor
1
broad histone mark
1
control
Date released
144
May, 2020
12
August, 2021
8
July, 2019
5
December, 2019
5
January, 2019
3
August, 2017
3
November, 2018
2
June, 2019
2
March, 2020
1
February, 2020
1
February, 2021
1
October, 2019
Available data
681
bam
622
bigWig
465
fastq
441
bed narrowPeak
358
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
187
Homo sapiens
Biosample type
160
tissue
16
cell line
11
primary cell
Organ
505
connective tissue
446
pancreas
407
adipose tissue
198
heart
187
liver
177
epithelium
102
kidney
81
vasculature
79
blood vessel
62
artery
61
brain
58
bone element
43
limb
43
musculature of body
18
ureter
17
embryo
9
eye
7
nerve
2
intestine
2
spleen
2
vein
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
187
AMP
Genome assembly (visualization)
175
hg19
173
GRCh38
Lab
178
AMP-T2D consortium
9
Bing Ren, UCSD
BIOSAMPLE
ASSAY
187 results
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total RNA-seq
ChIP-seq
DNase-seq
pCHi-C
small RNA-seq
Hi-C
tissue
liver
147
3
2
1
1
right lobe of liver
3
1
2
cell line
HepG2
14
2
primary cell
hepatocyte
5
3
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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