Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
DNase-seq
6
ChIP-seq
1
Hi-C
1
pCHi-C
Assay category
35
DNA accessibility
6
DNA binding
1
3D chromatin structure
Target of assay
3
histone
3
histone modification
2
narrow histone mark
2
transcription factor
1
broad histone mark
1
control
Date released
32
June, 2019
3
August, 2017
3
August, 2021
3
November, 2018
1
February, 2021
1
July, 2019
Available data
892
bam
806
bigWig
592
bed narrowPeak
465
fastq
452
bigBed narrowPeak
342
tsv
93
bed broadPeak
93
bigBed broadPeak
92
tagAlign
43
bed bed3+
11
bed bedMethyl
11
bigBed bedMethyl
5
bedpe bed3+
5
hic
3
tar
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
43
Homo sapiens
Biosample type
33
tissue
9
primary cell
1
cell line
Organ
78
kidney
36
limb
35
brain
34
musculature of body
30
heart
29
pancreas
27
connective tissue
21
epithelium
18
ureter
13
liver
13
vasculature
11
blood vessel
6
adipose tissue
4
artery
4
eye
3
embryo
2
nerve
2
vein
1
spleen
Project
43
AMP
Genome assembly (visualization)
41
GRCh38
40
hg19
Lab
43
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
BIOSAMPLE
ASSAY
43 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
ChIP-seq
Hi-C
pCHi-C
tissue
heart
18
liver
2
3
heart left ventricle
3
coronary artery
2
right atrium auricular region
2
+ See 3 more…
primary cell
hepatocyte
1
3
cardiac fibroblast
3
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
cell line
HepG2
1
See all biosamples
Download