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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
21
ChIP-seq
8
DNase-seq
1
Hi-C
Assay category
21
DNA binding
8
DNA accessibility
1
3D chromatin structure
Target of assay
12
histone
12
histone modification
7
transcription factor
6
broad histone mark
6
narrow histone mark
2
RNA binding protein
2
control
Date released
19
August, 2017
4
June, 2019
3
November, 2018
2
October, 2019
2
September, 2017
Available data
713
bam
639
bigWig
495
fastq
418
tsv
228
bed narrowPeak
104
bigBed narrowPeak
80
zippedFastqFolder
30
bed bed3+
22
bed broadPeak
19
tagAlign
8
bed bedMethyl
8
bigBed bedMethyl
8
bigBed broadPeak
7
bedpe bed3+
7
hic
6
txt
3
cool
1
bedpe
1
hdf5
Organism
30
Homo sapiens
Biosample type
28
tissue
2
cell line
Organ
78
kidney
36
limb
35
brain
34
musculature of body
30
heart
29
pancreas
27
connective tissue
21
epithelium
18
ureter
13
liver
13
vasculature
11
blood vessel
6
adipose tissue
4
artery
4
eye
3
embryo
2
nerve
2
vein
1
spleen
Project
30
AMP
Genome assembly (visualization)
30
GRCh38
28
hg19
Lab
30
AMP-T2D consortium
Audit category:
10
missing controlled_by
Audit category:
1
inconsistent assembly
BIOSAMPLE
ASSAY
30 results
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Clear Filters
ChIP-seq
DNase-seq
Hi-C
tissue
islet of Langerhans
21
body of pancreas
4
pancreas
2
spleen
1
cell line
Panc1
1
1
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