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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
105
single cell RNA-seq
41
total RNA-seq
33
pCHi-C
18
ATAC-seq
6
WGBS
4
Hi-C
3
snDrop-seq
2
Capture-C
2
RNA microarray
1
snATAC-seq
Assay category
146
Transcription
19
DNA accessibility
6
DNA methylation
4
3D chromatin structure
Date released
110
August, 2021
32
March, 2020
25
February, 2020
20
February, 2023
16
February, 2021
4
December, 2019
4
July, 2019
2
May, 2021
1
May, 2020
1
May, 2022
Available data
432
bam
406
fastq
239
bigWig
200
tsv
185
bed narrowPeak
160
txt
153
zippedFastqFolder
151
tagAlign
44
bigBed narrowPeak
40
bed broadPeak
23
bedpe bed3+
22
hic
19
bed bedMethyl
19
bigBed bedMethyl
18
bigBed broadPeak
15
bed bed3+
10
bed bed3
8
csv
7
bed bedgraph
4
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
vcf
Organism
215
Homo sapiens
Biosample type
160
tissue
25
primary cell
16
cell line
10
in vitro differentiated cells
4
stem cell
Organ
98
heart
17
brain
14
liver
12
blood vessel
12
connective tissue
12
epithelium
12
kidney
12
vasculature
11
pancreas
5
eye
4
artery
4
musculature of body
3
adipose tissue
3
limb
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
209
AMP
6
HPAP
Genome assembly (visualization)
GRCh38
1652
hg19
Lab
195
AMP-T2D consortium
10
Bing Ren, UCSD
6
Klaus Kaestner, Upenn
2
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
18
inconsistent ontology term
10
audit script error
assembly!
GRCh38
BIOSAMPLE
ASSAY
215 results
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single cell RNA-seq
total RNA-seq
pCHi-C
ATAC-seq
WGBS
Hi-C
snDrop-seq
Capture-C
RNA microarray
snATAC-seq
tissue
heart left ventricle
18
1
right cardiac atrium
18
1
heart right ventricle
17
1
left cardiac atrium
18
aorta
4
1
+ See 57 more…
primary cell
pancreatic alpha cell
6
gabaergic neuron
3
glutamatergic neuron
3
microglial cell/astrocyte
3
oligodendrocyte
3
+ See 6 more…
cell line
HepG2
9
2
EndoC_BH1
1
MCF-7
1
RCC 7860 VHL
1
RCC 7860 vector
1
+ See 1 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
1
adipocyte
1
1
immature adipocyte
2
embryonic stem cell
1
osteoblast
1
+ See 1 more…
stem cell
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
See all biosamples
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