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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
5
Hi-C
4
ATAC-seq
2
Capture-C
2
total RNA-seq
1
pCHi-C
Assay category
5
3D chromatin structure
4
DNA accessibility
2
Transcription
Date released
4
February, 2023
4
July, 2019
2
August, 2021
2
May, 2021
1
February, 2021
May, 2022
1
October, 2019
Available data
bam
2722
bigWig
1600
tsv
1359
bed narrowPeak
1216
fastq
800
bigBed narrowPeak
286
bed broadPeak
269
bigBed broadPeak
260
bed bed3+
251
tagAlign
154
txt
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
19
zippedFastqFolder
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
14
Homo sapiens
Biosample type
6
in vitro differentiated cells
6
primary cell
2
cell line
Organ
7
connective tissue
3
brain
2
blood vessel
2
epithelium
2
liver
2
vasculature
1
pancreas
Project
14
AMP
Genome assembly (visualization)
14
hg19
1
GRCh38
Lab
10
AMP-T2D consortium
2
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
Audit category:
1
inconsistent assembly
target.investigated_as!
broad histone mark
files.file_type!
bam
month_released!
May, 2022
BIOSAMPLE
ASSAY
14 results
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Clear Filters
Hi-C
ATAC-seq
Capture-C
total RNA-seq
pCHi-C
in vitro differentiated cells
adipocyte
1
1
immature adipocyte
2
osteoblast
1
preadipocyte
1
primary cell
CD8-positive, alpha-beta T cell
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
endothelial cell of hepatic sinusoid
1
cell line
HepG2
1
Panc1
1
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