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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
ChIP-seq
7
DNase-seq
1
Hi-C
Assay category
19
DNA binding
7
DNA accessibility
1
3D chromatin structure
Target of assay
12
histone
12
histone modification
7
transcription factor
6
broad histone mark
6
narrow histone mark
2
RNA binding protein
control
Date released
19
August, 2017
4
June, 2019
2
November, 2018
2
October, 2019
Available data
643
bam
619
bigWig
441
fastq
413
tsv
214
bed narrowPeak
91
bigBed narrowPeak
80
zippedFastqFolder
27
bed bed3+
21
bed broadPeak
16
tagAlign
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
txt
4
bed bedMethyl
4
bigBed bedMethyl
3
cool
1
bedpe
1
hdf5
Organism
27
Homo sapiens
Biosample type
25
tissue
2
cell line
Organ
78
kidney
36
limb
34
musculature of body
32
brain
30
heart
27
pancreas
25
connective tissue
19
epithelium
18
ureter
11
liver
11
vasculature
9
blood vessel
6
adipose tissue
4
artery
4
eye
2
embryo
2
nerve
2
vein
1
spleen
Project
27
AMP
Genome assembly (visualization)
27
GRCh38
25
hg19
Lab
27
AMP-T2D consortium
Audit category:
10
missing controlled_by
Audit category:
1
inconsistent assembly
target.investigated_as!
control
month_released!
July, 2019
BIOSAMPLE
ASSAY
27 results
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Clear Filters
ChIP-seq
DNase-seq
Hi-C
tissue
islet of Langerhans
19
body of pancreas
4
pancreas
2
cell line
Panc1
1
1
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