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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
ChIP-seq
7
DNase-seq
1
Hi-C
Assay category
14
DNA binding
7
DNA accessibility
1
3D chromatin structure
Target of assay
12
histone
12
histone modification
transcription factor
6
broad histone mark
6
narrow histone mark
2
RNA binding protein
2
control
Date released
12
August, 2017
4
June, 2019
2
November, 2018
2
October, 2019
2
September, 2017
Available data
670
bam
604
bigWig
454
fastq
417
tsv
201
bed narrowPeak
81
bigBed narrowPeak
80
zippedFastqFolder
22
bed bed3+
21
bed broadPeak
18
tagAlign
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
cool
1
bedpe
1
hdf5
Organism
22
Homo sapiens
Biosample type
20
tissue
2
cell line
Organ
78
kidney
36
limb
35
brain
musculature of body
30
heart
22
pancreas
21
epithelium
18
ureter
17
connective tissue
13
vasculature
11
blood vessel
11
liver
4
artery
4
eye
3
embryo
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
22
AMP
Genome assembly (visualization)
22
GRCh38
20
hg19
Lab
22
AMP-T2D consortium
Audit category:
4
missing controlled_by
Audit category:
1
inconsistent assembly
target.investigated_as!
transcription factor
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
22 results
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Clear Filters
ChIP-seq
DNase-seq
Hi-C
tissue
islet of Langerhans
14
body of pancreas
4
pancreas
2
cell line
Panc1
1
1
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