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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
59
total RNA-seq
14
ATAC-seq
13
single cell RNA-seq
1
snATAC-seq
Assay category
72
Transcription
15
DNA accessibility
Date released
90
February, 2021
57
August, 2021
17
February, 2023
7
May, 2022
Available data
2810
bam
2607
bigWig
1481
tsv
1373
bed narrowPeak
931
fastq
687
bigBed narrowPeak
378
tagAlign
270
bed bed3+
263
bed broadPeak
226
bigBed broadPeak
160
txt
153
zippedFastqFolder
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
21
bedpe bed3+
21
hic
11
bed bed3
8
csv
7
bed bedgraph
4
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
Organism
171
Homo sapiens
Biosample type
162
tissue
8
in vitro differentiated cells
cell line
1
primary cell
Organ
92
bone element
62
kidney
8
skeleton
6
connective tissue
6
pancreas
1
brain
1
musculature of body
Project
171
AMP
Genome assembly (visualization)
15
hg19
1
GRCh38
Lab
105
AMP-T2D consortium
57
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
85
inconsistent ontology term
6
audit script error
biosample_type!
cell line
BIOSAMPLE
ASSAY
171 results
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RNA microarray
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
tissue
bone element
84
kidney
49
13
islet of Langerhans
6
acetabular part of hip bone
1
1
ilium
1
1
+ See 4 more…
in vitro differentiated cells
chondrocyte
5
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
primary cell
osteoblast
1
See all biosamples
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