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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
DNase-seq
25
ChIP-seq
11
ATAC-seq
5
Hi-C
2
Capture-C
2
pCHi-C
2
total RNA-seq
Assay category
39
DNA accessibility
25
DNA binding
5
3D chromatin structure
2
Transcription
Target of assay
13
histone
13
histone modification
7
narrow histone mark
6
broad histone mark
6
control
6
transcription factor
Date released
24
June, 2019
15
December, 2017
9
February, 2023
7
August, 2017
5
August, 2021
4
February, 2021
4
July, 2019
4
October, 2019
2
May, 2021
1
November, 2020
Available data
1485
bam
1397
bigWig
981
fastq
833
bed narrowPeak
524
tsv
481
bigBed narrowPeak
160
tagAlign
153
zippedFastqFolder
109
bed broadPeak
109
bigBed broadPeak
68
bed bed3+
13
bedpe bed3+
12
hic
11
bed bedMethyl
11
bigBed bedMethyl
7
bed bed3
7
bed bedgraph
5
hdf5
4
tar
4
txt
3
cool
2
csv
2
ibed
1
vcf
Organism
75
Homo sapiens
Biosample type
tissue
38
primary cell
30
in vitro differentiated cells
4
cell line
3
stem cell
Organ
27
connective tissue
21
epithelium
10
kidney
8
brain
8
liver
8
vasculature
6
blood vessel
3
embryo
3
heart
2
pancreas
2
vein
1
eye
1
musculature of body
Project
75
AMP
Genome assembly (visualization)
68
hg19
56
GRCh38
Lab
71
AMP-T2D consortium
2
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
5
inconsistent ontology term
1
inconsistent replicate
Audit category:
10
inconsistent control read length
1
inconsistent assembly
biosample_type!
tissue
BIOSAMPLE
ASSAY
75 results
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DNase-seq
ChIP-seq
ATAC-seq
Hi-C
Capture-C
pCHi-C
total RNA-seq
primary cell
hepatocyte
1
3
cardiac fibroblast
3
osteoblast
1
1
1
CD8-positive, alpha-beta T cell
2
astrocyte of the cerebellum
1
1
+ See 19 more…
in vitro differentiated cells
adipocyte
7
1
1
chondrocyte
5
Posterior foregut
3
definitive endodermal cell
3
pancreatic endoderm
3
+ See 4 more…
cell line
HepG2
1
1
Panc1
1
1
stem cell
hESC
3
See all biosamples
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