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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
59
total RNA-seq
13
single cell RNA-seq
5
ATAC-seq
1
snATAC-seq
Assay category
72
Transcription
6
DNA accessibility
Date released
89
February, 2021
57
August, 2021
9
February, 2023
7
May, 2022
Available data
1907
bam
1732
bigWig
1076
tsv
944
bed narrowPeak
561
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
162
Homo sapiens
Biosample type
162
tissue
8
in vitro differentiated cells
2
cell line
1
primary cell
Organ
92
bone element
62
kidney
8
skeleton
6
pancreas
1
brain
1
musculature of body
Project
162
AMP
Genome assembly (visualization)
6
hg19
Lab
99
AMP-T2D consortium
57
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
6
audit script error
BIOSAMPLE
ASSAY
162 results
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RNA microarray
total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
tissue
bone element
84
kidney
49
13
islet of Langerhans
6
acetabular part of hip bone
1
1
ilium
1
1
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