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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
47
ChIP-seq
1
ATAC-seq
1
DNase-seq
Assay category
47
DNA binding
2
DNA accessibility
Target of assay
44
transcription factor
4
RNA binding protein
4
chromatin remodeller
3
histone
3
histone modification
2
broad histone mark
1
narrow histone mark
1
other context
1
other post-translational modification
Date released
47
November, 2017
1
February, 2021
1
October, 2019
Available data
582
bam
522
bigWig
427
fastq
404
bed narrowPeak
355
bigBed narrowPeak
119
tsv
59
bed broadPeak
59
bigBed broadPeak
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
49
Homo sapiens
Biosample type
183
tissue
49
cell line
39
primary cell
6
in vitro differentiated cells
Organ
48
liver
1
pancreas
Project
49
AMP
Genome assembly (visualization)
49
hg19
37
GRCh38
Lab
49
AMP-T2D consortium
Audit category:
1
inconsistent replicate
Audit category:
2
inconsistent control read length
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
49 results
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ChIP-seq
ATAC-seq
DNase-seq
cell line
HepG2
47
1
Panc1
1
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