Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
206
DNase-seq
57
ChIP-seq
53
ATAC-seq
52
single cell RNA-seq
41
WGBS
21
snATAC-seq
Assay category
280
DNA accessibility
57
DNA binding
52
Transcription
41
DNA methylation
Target of assay
49
transcription factor
9
RNA binding protein
8
histone
8
histone modification
5
chromatin remodeller
4
broad histone mark
4
narrow histone mark
1
other context
1
other post-translational modification
Date released
187
June, 2019
134
May, 2022
53
November, 2017
19
September, 2020
10
February, 2023
9
November, 2018
9
October, 2019
4
August, 2017
2
February, 2021
1
March, 2019
1
November, 2020
1
October, 2017
Available data
3392
bam
3129
bigWig
1777
bed narrowPeak
1600
tsv
1358
fastq
1042
bigBed narrowPeak
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
430
Homo sapiens
Biosample type
192
primary cell
183
tissue
49
cell line
6
in vitro differentiated cells
Organ
102
epithelium
89
pancreas
78
kidney
53
liver
39
brain
36
limb
33
musculature of body
30
heart
18
ureter
17
vasculature
15
connective tissue
13
blood vessel
4
artery
4
bone element
4
eye
4
skeleton
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
277
AMP
153
HPAP
Genome assembly (visualization)
253
hg19
250
GRCh38
Lab
275
AMP-T2D consortium
153
Klaus Kaestner, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
1
inconsistent replicate
Audit category:
2
inconsistent control read length
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
430 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
WGBS
snATAC-seq
primary cell
Langerhans cell
52
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
endothelial cell of umbilical vein
2
2
pancreatic acinar cell
4
+ See 22 more…
tissue
heart
18
muscle of arm
17
brain
14
1
kidney
13
muscle of leg
13
+ See 44 more…
cell line
HepG2
47
1
Panc1
1
in vitro differentiated cells
chondrocyte
5
adipocyte
1
See all biosamples
Download