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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
8
ATAC-seq
2
pCHi-C
Assay category
8
DNA accessibility
Date released
6
February, 2023
2
February, 2021
2
March, 2020
Available data
3326
bam
3111
bigWig
1809
bed narrowPeak
1542
tsv
1358
fastq
1042
bigBed narrowPeak
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
153
zippedFastqFolder
73
txt
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
8
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
10
Homo sapiens
Biosample type
7
in vitro differentiated cells
1
cell line
1
primary cell
1
tissue
Organ
6
connective tissue
bone element
4
skeleton
1
brain
1
liver
Project
10
AMP
Genome assembly (visualization)
10
hg19
2
GRCh38
Lab
10
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
1
inconsistent replicate
files.file_type!
tagAlign
organ_slims!
bone element
BIOSAMPLE
ASSAY
10 results
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ATAC-seq
pCHi-C
in vitro differentiated cells
chondrocyte
5
cardiomyocytes (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
cell line
HepG2
1
primary cell
osteoblast
1
tissue
brain
1
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