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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
176
DNase-seq
35
ChIP-seq
7
ATAC-seq
Assay category
183
DNA accessibility
35
DNA binding
Target of assay
35
histone
35
histone modification
20
broad histone mark
15
narrow histone mark
Date released
163
June, 2019
26
August, 2017
9
November, 2018
6
November, 2017
5
February, 2023
4
October, 2017
4
October, 2019
1
March, 2019
Available data
1907
bam
1732
bigWig
1076
tsv
944
bed narrowPeak
561
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
212
Homo sapiens
Biosample type
218
tissue
60
cell line
50
primary cell
6
in vitro differentiated cells
Organ
68
kidney
45
musculature of body
37
brain
36
limb
27
heart
20
pancreas
18
ureter
5
blood vessel
5
vasculature
4
artery
4
bone element
4
skeleton
3
adipose tissue
3
connective tissue
3
eye
3
liver
2
nerve
1
spleen
Project
218
AMP
Genome assembly (visualization)
201
hg19
191
GRCh38
Lab
216
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
1
inconsistent assembly
BIOSAMPLE
ASSAY
218 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
brain
14
3
1
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
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