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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
Hi-C
8
ATAC-seq
3
pCHi-C
Assay category
20
3D chromatin structure
8
DNA accessibility
Date released
12
March, 2020
6
February, 2023
3
October, 2019
3
October, 2022
2
August, 2021
2
February, 2021
2
November, 2019
1
August, 2018
Available data
3326
bam
3071
bigWig
1769
bed narrowPeak
1542
tsv
1358
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
153
zippedFastqFolder
73
txt
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
8
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
31
Homo sapiens
Biosample type
12
in vitro differentiated cells
11
tissue
5
primary cell
3
cell line
Organ
7
connective tissue
7
pancreas
5
epithelium
bone element
4
skeleton
3
heart
3
liver
2
blood vessel
2
musculature of body
2
vasculature
1
adipose tissue
1
brain
1
vein
Project
28
AMP
3
HPAP
Genome assembly (visualization)
29
hg19
2
GRCh38
Lab
26
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
Audit category:
7
inconsistent ontology term
3
audit script error
1
inconsistent replicate
organ_slims!
bone element
BIOSAMPLE
ASSAY
31 results
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Hi-C
ATAC-seq
pCHi-C
in vitro differentiated cells
chondrocyte
5
cardiomyocytes (cardiac muscle cell)
2
1
lymphocyte of B lineage (iPSC)
1
1
cardiac precursors (cardiac muscle cell)
1
white fat cell
1
tissue
islet of Langerhans
2
psoas muscle
2
aorta
1
brain
1
heart
1
+ See 4 more…
primary cell
endothelial cell of umbilical vein
1
osteoblast
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
HepG2
1
1
EndoC_BH1
1
See all biosamples
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