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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
Hi-C
12
ATAC-seq
3
pCHi-C
Assay category
18
3D chromatin structure
12
DNA accessibility
Date released
10
February, 2023
10
March, 2020
3
October, 2019
3
October, 2022
2
August, 2021
2
February, 2021
2
November, 2019
1
August, 2018
Available data
3207
bam
2974
bigWig
1644
bed narrowPeak
1532
tsv
1352
fastq
959
bigBed narrowPeak
392
tagAlign
305
bed broadPeak
268
bigBed broadPeak
260
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
21
bedpe bed3+
20
hic
12
bed bed3
8
csv
7
bed bedgraph
3
cool
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
33
Homo sapiens
Biosample type
14
tissue
12
in vitro differentiated cells
4
primary cell
3
cell line
Organ
7
connective tissue
7
pancreas
5
epithelium
4
bone element
4
skeleton
3
heart
3
liver
2
blood vessel
2
musculature of body
vasculature
1
adipose tissue
1
brain
1
vein
Project
30
AMP
3
HPAP
Genome assembly (visualization)
31
hg19
2
GRCh38
Lab
28
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
Audit category:
7
inconsistent ontology term
3
audit script error
1
inconsistent replicate
organ_slims!
vasculature
BIOSAMPLE
ASSAY
33 results
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Clear Filters
Hi-C
ATAC-seq
pCHi-C
tissue
islet of Langerhans
2
psoas muscle
2
acetabular part of hip bone
1
brain
1
heart
1
+ See 7 more…
in vitro differentiated cells
chondrocyte
5
cardiomyocytes (cardiac muscle cell)
2
1
lymphocyte of B lineage (iPSC)
1
1
cardiac precursors (cardiac muscle cell)
1
white fat cell
1
primary cell
osteoblast
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
HepG2
1
1
EndoC_BH1
1
See all biosamples
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