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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
205
DNase-seq
79
ChIP-seq
7
ATAC-seq
Assay category
212
DNA accessibility
79
DNA binding
Target of assay
49
transcription factor
30
histone
30
histone modification
16
broad histone mark
14
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
187
June, 2019
64
November, 2017
14
August, 2017
9
November, 2018
9
October, 2019
5
February, 2023
2
February, 2021
1
November, 2020
Available data
3101
bam
2870
bigWig
1645
bed narrowPeak
1469
tsv
1217
fastq
1025
bigBed narrowPeak
358
tagAlign
321
bed broadPeak
284
bigBed broadPeak
248
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
19
hic
16
bedpe bed3+
8
csv
7
bed bed3
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
291
Homo sapiens
Biosample type
181
tissue
60
cell line
50
primary cell
in vitro differentiated cells
Organ
78
kidney
64
liver
39
brain
36
limb
33
musculature of body
30
heart
22
epithelium
18
ureter
17
vasculature
13
blood vessel
9
connective tissue
7
pancreas
4
artery
4
bone element
4
eye
4
skeleton
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
291
AMP
Genome assembly (visualization)
268
GRCh38
268
hg19
Lab
291
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
inconsistent control read length
1
inconsistent assembly
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
291 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
muscle of arm
17
brain
14
1
kidney
13
muscle of leg
13
+ See 43 more…
cell line
HepG2
58
1
Panc1
1
primary cell
skeletal muscle myoblast
1
13
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
+ See 18 more…
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