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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
DNase-seq
21
ChIP-seq
1
ATAC-seq
Assay category
29
DNA accessibility
21
DNA binding
Target of assay
16
histone
16
histone modification
8
broad histone mark
8
narrow histone mark
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
24
June, 2019
14
August, 2017
6
November, 2017
4
October, 2019
1
February, 2021
1
November, 2020
Available data
613
bigWig
609
bam
409
fastq
295
bed narrowPeak
270
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
50
Homo sapiens
Biosample type
181
tissue
60
cell line
50
primary cell
6
in vitro differentiated cells
Organ
22
epithelium
12
vasculature
11
brain
10
kidney
8
blood vessel
7
connective tissue
4
vein
3
heart
2
liver
1
eye
1
musculature of body
Project
50
AMP
Genome assembly (visualization)
46
GRCh38
43
hg19
Lab
50
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
1
inconsistent assembly
BIOSAMPLE
ASSAY
50 results
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DNase-seq
ChIP-seq
ATAC-seq
primary cell
skeletal muscle myoblast
1
13
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
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