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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ChIP-seq
37
DNase-seq
2
ATAC-seq
Assay category
64
DNA binding
39
DNA accessibility
Target of assay
47
transcription factor
17
histone
17
histone modification
9
narrow histone mark
8
broad histone mark
7
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
64
November, 2017
32
June, 2019
5
November, 2018
1
February, 2021
1
February, 2023
Available data
924
bam
844
bigWig
644
bed narrowPeak
486
fastq
485
bigBed narrowPeak
204
tagAlign
200
tsv
110
bed broadPeak
101
bigBed broadPeak
48
bed bed3+
5
bed bedMethyl
5
bigBed bedMethyl
4
hdf5
3
tar
2
bed bed3
2
bedpe bed3+
2
hic
1
csv
1
tagAlign bed3+
1
vcf
Organism
103
Homo sapiens
Biosample type
59
cell line
31
tissue
13
primary cell
Organ
78
kidney
64
liver
39
brain
36
limb
33
musculature of body
30
heart
22
epithelium
18
ureter
17
vasculature
15
connective tissue
13
blood vessel
7
pancreas
4
artery
4
bone element
4
eye
4
skeleton
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
103
AMP
Genome assembly (visualization)
93
hg19
88
GRCh38
Lab
103
AMP-T2D consortium
Audit category:
1
inconsistent replicate
Audit category:
13
inconsistent control read length
BIOSAMPLE
ASSAY
103 results
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ChIP-seq
DNase-seq
ATAC-seq
cell line
HepG2
58
1
tissue
brain
14
1
frontal cortex
2
liver
2
Ammon's horn
1
caudate nucleus
1
+ See 10 more…
primary cell
astrocyte of the cerebellum
2
1
brain microvascular endothelial cell
2
1
choroid plexus epithelial cell
2
1
astrocyte of the hippocampus
1
brain pericyte
1
+ See 2 more…
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