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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
25
Hi-C
12
ATAC-seq
3
pCHi-C
Assay category
25
3D chromatin structure
12
DNA accessibility
Date released
12
March, 2020
10
February, 2023
4
July, 2019
4
October, 2019
3
October, 2022
2
August, 2021
2
February, 2021
2
November, 2019
1
August, 2018
Available data
3392
bam
3129
bigWig
1777
bed narrowPeak
1600
tsv
1358
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
40
Homo sapiens
Biosample type
15
tissue
12
in vitro differentiated cells
9
primary cell
4
cell line
Organ
8
connective tissue
8
pancreas
7
epithelium
4
blood vessel
4
bone element
4
brain
4
liver
4
skeleton
4
vasculature
3
heart
2
musculature of body
1
adipose tissue
1
vein
Project
37
AMP
3
HPAP
Genome assembly (visualization)
38
hg19
3
GRCh38
Lab
35
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
Audit category:
7
inconsistent ontology term
3
audit script error
1
inconsistent replicate
Audit category:
1
inconsistent assembly
BIOSAMPLE
ASSAY
40 results
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Clear Filters
Hi-C
ATAC-seq
pCHi-C
tissue
islet of Langerhans
2
psoas muscle
2
acetabular part of hip bone
1
aorta
1
brain
1
+ See 8 more…
in vitro differentiated cells
chondrocyte
5
cardiomyocytes (cardiac muscle cell)
2
1
lymphocyte of B lineage (iPSC)
1
1
cardiac precursors (cardiac muscle cell)
1
white fat cell
1
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
endothelial cell of hepatic sinusoid
1
endothelial cell of umbilical vein
1
+ See 4 more…
cell line
HepG2
1
1
EndoC_BH1
1
Panc1
1
See all biosamples
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