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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
ATAC-seq
4
Hi-C
Assay category
6
DNA accessibility
4
3D chromatin structure
Date released
5
February, 2023
3
July, 2019
1
February, 2021
1
October, 2019
Available data
2449
bigWig
2435
bam
1524
bed narrowPeak
936
bigBed narrowPeak
935
fastq
928
tsv
289
bed broadPeak
254
bigBed broadPeak
237
tagAlign
224
bed bed3+
22
hic
21
bedpe bed3+
18
bed bedMethyl
18
bigBed bedMethyl
6
bed bed3
4
hdf5
4
tar
4
txt
3
bed bedgraph
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
10
Homo sapiens
Biosample type
5
tissue
3
primary cell
2
cell line
Organ
connective tissue
4
bone element
4
brain
4
skeleton
2
blood vessel
2
epithelium
2
liver
2
vasculature
1
pancreas
Project
10
AMP
Genome assembly (visualization)
10
hg19
2
GRCh38
Lab
10
AMP-T2D consortium
Audit category:
1
inconsistent replicate
Audit category:
1
inconsistent assembly
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
10 results
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ATAC-seq
Hi-C
tissue
acetabular part of hip bone
1
brain
1
ilium
1
ischium
1
pubis
1
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
endothelial cell of hepatic sinusoid
1
cell line
HepG2
1
Panc1
1
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