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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
13
Hi-C
12
ATAC-seq
Assay category
13
3D chromatin structure
12
DNA accessibility
Date released
10
February, 2023
March, 2020
4
October, 2019
3
October, 2022
2
August, 2021
2
February, 2021
2
November, 2019
1
March, 2019
1
March, 2023
Available data
3376
bam
3109
bigWig
1774
bed narrowPeak
1555
tsv
1358
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
13
hic
12
bed bed3
11
bedpe bed3+
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
25
Homo sapiens
Biosample type
9
tissue
7
in vitro differentiated cells
6
primary cell
3
cell line
Organ
6
connective tissue
6
pancreas
5
epithelium
4
bone element
4
skeleton
2
liver
1
blood vessel
1
brain
1
heart
1
kidney
1
vasculature
1
vein
Project
21
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
24
hg19
3
GRCh38
Lab
18
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
4
audit script error
3
inconsistent ontology term
1
inconsistent replicate
month_released!
March, 2020
BIOSAMPLE
ASSAY
25 results
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Hi-C
ATAC-seq
tissue
islet of Langerhans
2
acetabular part of hip bone
1
brain
1
heart
1
ilium
1
+ See 3 more…
in vitro differentiated cells
chondrocyte
5
cardiac precursors (cardiac muscle cell)
1
cardiomyocytes (cardiac muscle cell)
1
primary cell
chondrocytes
1
endothelial cell of umbilical vein
1
osteoblast
1
pancreatic acinar cell
1
pancreatic alpha cell
1
+ See 1 more…
cell line
HepG2
1
1
EndoC_BH1
1
See all biosamples
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