Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
390
ChIP-seq
10
ATAC-seq
Assay category
390
DNA binding
10
DNA accessibility
Target of assay
321
histone
321
histone modification
174
narrow histone mark
147
broad histone mark
65
control
4
transcription factor
Date released
90
May, 2021
85
August, 2017
78
November, 2017
50
May, 2020
49
October, 2019
24
August, 2021
14
October, 2017
February, 2021
10
February, 2023
Available data
2820
bam
2578
bigWig
1754
bed narrowPeak
1313
fastq
1042
bigBed narrowPeak
1041
tsv
390
tagAlign
322
bed broadPeak
285
bigBed broadPeak
271
bed bed3+
153
zippedFastqFolder
72
txt
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
10
bed bed3
5
hdf5
4
tar
3
bed bedgraph
3
cool
2
csv
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
393
Homo sapiens
Biosample type
243
tissue
100
primary cell
45
in vitro differentiated cells
12
cell line
Organ
119
brain
86
liver
27
connective tissue
19
pancreas
15
musculature of body
8
adipose tissue
7
epithelium
4
bone element
4
skeleton
1
pituitary gland
Project
316
AMP
84
T1D
Genome assembly (visualization)
243
hg19
241
GRCh38
Lab
316
AMP-T2D consortium
84
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
11
inconsistent control read length
2
inconsistent assembly
month_released!
February, 2021
BIOSAMPLE
ASSAY
400 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
tissue
liver
70
substantia nigra
16
brain
14
1
caudate nucleus
15
layer of hippocampus
15
+ See 47 more…
primary cell
monocyte
84
skeletal muscle myoblast
12
hepatocyte
4
in vitro differentiated cells
neural progenitor cell
20
adipocyte
14
chondrocyte
5
cardiomyocytes
3
pancreatic PP cell
3
cell line
HepG2
12
See all biosamples
Download