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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
ATAC-seq
3
ChIP-seq
1
FAIRE-seq
Assay category
20
DNA accessibility
3
DNA binding
Target of assay
3
transcription factor
1
RNA binding protein
Date released
13
February, 2023
6
February, 2021
3
November, 2017
1
October, 2019
Available data
3392
bam
3129
bigWig
1777
bed narrowPeak
1600
tsv
1358
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
23
Homo sapiens
Biosample type
12
in vitro differentiated cells
5
tissue
4
cell line
2
primary cell
Organ
10
connective tissue
4
bone element
4
liver
4
skeleton
1
blood vessel
1
brain
1
epithelium
1
vasculature
1
vein
Project
23
AMP
Genome assembly (visualization)
23
hg19
2
GRCh38
Lab
20
AMP-T2D consortium
3
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
BIOSAMPLE
ASSAY
23 results
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Clear Filters
ATAC-seq
ChIP-seq
FAIRE-seq
in vitro differentiated cells
chondrocyte
5
adipocyte
4
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
tissue
acetabular part of hip bone
1
brain
1
ilium
1
ischium
1
pubis
1
cell line
HepG2
1
3
primary cell
endothelial cell of umbilical vein
1
osteoblast
1
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