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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
15
ATAC-seq
10
total RNA-seq
1
MPRA
1
snATAC-seq
Assay category
16
DNA accessibility
10
Transcription
Date released
86
February, 2021
17
February, 2023
7
May, 2022
1
October, 2022
Available data
3248
bam
3038
bigWig
1634
bed narrowPeak
1576
tsv
1358
fastq
938
bigBed narrowPeak
398
tagAlign
244
bed broadPeak
207
bigBed broadPeak
195
bed bed3+
153
zippedFastqFolder
99
txt
32
bed bedMethyl
32
bigBed bedMethyl
23
bedpe bed3+
22
hic
12
bed bed3
7
bed bedgraph
5
hdf5
4
tar
3
cool
3
csv
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
110
Homo sapiens
Biosample type
100
tissue
8
in vitro differentiated cells
2
cell line
1
primary cell
Organ
92
bone element
kidney
8
skeleton
6
connective tissue
6
pancreas
1
brain
1
liver
1
musculature of body
Project
111
AMP
Genome assembly (visualization)
16
hg19
2
GRCh38
Lab
102
AMP-T2D consortium
6
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
85
inconsistent ontology term
1
audit script error
1
inconsistent replicate
organ_slims!
kidney
BIOSAMPLE
ASSAY
111 results
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RNA microarray
ATAC-seq
total RNA-seq
MPRA
snATAC-seq
tissue
bone element
84
islet of Langerhans
6
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
+ See 3 more…
in vitro differentiated cells
chondrocyte
5
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
HepG2
1
MIN6
1
primary cell
osteoblast
1
See all biosamples
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