Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
51
ATAC-seq
41
WGBS
21
snATAC-seq
Assay category
72
DNA accessibility
Transcription
41
DNA methylation
Date released
101
May, 2022
10
February, 2023
2
February, 2021
Available data
1986
bam
1777
bed narrowPeak
1727
bigWig
1042
bigBed narrowPeak
987
fastq
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
271
bed bed3+
101
zippedFastqFolder
89
txt
64
xls
56
tsv
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
113
Homo sapiens
Biosample type
102
primary cell
5
in vitro differentiated cells
5
tissue
1
cell line
Organ
80
epithelium
80
pancreas
6
connective tissue
4
bone element
4
skeleton
1
brain
1
liver
Project
101
HPAP
12
AMP
Genome assembly (visualization)
12
hg19
2
GRCh38
Lab
101
Klaus Kaestner, Upenn
12
AMP-T2D consortium
Audit category:
1
inconsistent replicate
assay_slims!
Transcription
BIOSAMPLE
ASSAY
113 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
WGBS
snATAC-seq
primary cell
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
Langerhans cell
21
pancreatic acinar cell
4
osteoblast
1
in vitro differentiated cells
chondrocyte
5
tissue
acetabular part of hip bone
1
brain
1
ilium
1
ischium
1
pubis
1
cell line
HepG2
1
Download