Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
single cell RNA-seq
47
ATAC-seq
41
WGBS
21
snATAC-seq
Assay category
68
DNA accessibility
52
Transcription
41
DNA methylation
Date released
134
May, 2022
19
September, 2020
6
February, 2023
2
February, 2021
Available data
3384
bam
3129
bigWig
1769
bed narrowPeak
1600
tsv
1358
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
157
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
8
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
161
Homo sapiens
Biosample type
154
primary cell
5
in vitro differentiated cells
1
cell line
1
tissue
Organ
80
epithelium
80
pancreas
6
connective tissue
4
bone element
skeleton
1
brain
1
liver
Project
153
HPAP
8
AMP
Genome assembly (visualization)
8
hg19
2
GRCh38
Lab
153
Klaus Kaestner, Upenn
8
AMP-T2D consortium
Audit category:
1
inconsistent replicate
organ_slims!
skeleton
BIOSAMPLE
ASSAY
161 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
ATAC-seq
WGBS
snATAC-seq
primary cell
Langerhans cell
52
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
osteoblast
1
in vitro differentiated cells
chondrocyte
5
cell line
HepG2
1
tissue
brain
1
Download