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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
total RNA-seq
59
ChIP-seq
15
ATAC-seq
7
single cell RNA-seq
4
DNase-seq
2
RRBS
Assay category
134
Transcription
59
DNA binding
19
DNA accessibility
2
DNA methylation
Target of assay
33
histone
33
histone modification
19
narrow histone mark
14
broad histone mark
14
transcription factor
12
control
7
recombinant protein
4
RNA binding protein
Date released
73
May, 2021
44
February, 2021
26
June, 2019
21
November, 2019
21
October, 2019
8
May, 2020
6
July, 2018
5
March, 2020
4
December, 2017
3
May, 2019
2
July, 2019
1
June, 2018
Available data
212
bam
192
bigWig
150
tsv
85
txt
63
bed narrowPeak
24
bigBed narrowPeak
11
fastq
7
bedpe bed3+
6
bed bed3+
5
hic
4
bed broadPeak
4
bigBed broadPeak
3
tagAlign
2
bed bedMethyl
2
bigBed bedMethyl
2
ibed
1
bed bedgraph
Organism
214
Homo sapiens
Biosample type
101
in vitro differentiated cells
62
cell line
47
primary cell
4
tissue
Organ
64
epithelium
54
pancreas
21
kidney
14
connective tissue
9
musculature of body
6
embryo
6
heart
2
brain
1
adipose tissue
1
limb
1
liver
1
vasculature
Project
206
AMP
8
T1D
Genome assembly (visualization)
202
hg19
196
GRCh38
Lab
210
AMP-T2D consortium
4
Kyle Gaulton, UCSD
Audit category:
214
inconsistent ontology term
28
inconsistent control
1
inconsistent replicate
Audit category:
1
inconsistent control read length
BIOSAMPLE
ASSAY
214 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RRBS
in vitro differentiated cells
cardiomyocytes
59
3
cardiac precursors (cardiac muscle cell)
19
1
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
Hepatic endoderm
4
cardiomyocytes (cardiac muscle cell)
3
1
+ See 6 more…
cell line
EndoC_BH1
33
15
1
RCC 7860 HIF1a re-expression
1
4
RCC 7860 HIF2a over-expression
1
3
RCC 7860 vector
1
3
primary cell
skeletal muscle satellite cell
8
mesenchymal stem cell
7
cardiac fibroblast
4
1
1
epithelial cell of proximal tubule
3
1
1
central memory CD8-positive, alpha-beta T cell
2
2
+ See 9 more…
tissue
adipose tissue(adipose white tissue)
1
brodmann area 43
1
insular gyrus
1
muscle of leg
1
See all biosamples
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