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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
RRBS
11
ATAC-seq
Assay category
19
DNA methylation
11
DNA accessibility
Date released
15
July, 2019
10
February, 2023
4
August, 2017
1
February, 2021
Available data
3392
bam
bigWig
1777
bed narrowPeak
1600
tsv
1358
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
30
Homo sapiens
Biosample type
14
tissue
10
primary cell
5
in vitro differentiated cells
1
cell line
Organ
6
connective tissue
6
epithelium
4
bone element
4
kidney
4
skeleton
3
brain
3
liver
3
musculature of body
2
heart
2
pancreas
1
eye
1
pericardium
1
vasculature
Project
30
AMP
Genome assembly (visualization)
30
hg19
1
GRCh38
Lab
30
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
1
inconsistent replicate
files.file_type!
bigWig
BIOSAMPLE
ASSAY
30 results
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Clear Filters
RRBS
ATAC-seq
tissue
brain
1
1
skeletal muscle tissue
2
acetabular part of hip bone
1
heart left ventricle
1
ilium
1
+ See 7 more…
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
+ See 5 more…
in vitro differentiated cells
chondrocyte
5
cell line
HepG2
1
See all biosamples
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