Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
132
ChIP-seq
5
ATAC-seq
4
DNase-seq
4
RRBS
2
WGBS
1
FAIRE-seq
Assay category
132
DNA binding
10
DNA accessibility
6
DNA methylation
Target of assay
108
histone modification
107
histone
56
broad histone mark
50
narrow histone mark
24
transcription factor
7
RNA binding protein
3
chromatin remodeller
Date released
313
November, 2017
210
June, 2019
189
October, 2019
148
August, 2017
133
May, 2021
106
August, 2021
97
May, 2019
80
November, 2018
72
December, 2017
65
April, 2019
65
February, 2023
46
September, 2018
45
October, 2018
38
May, 2022
37
November, 2019
30
December, 2018
30
July, 2019
27
May, 2020
23
February, 2021
21
January, 2019
16
February, 2018
12
October, 2017
5
September, 2017
3
March, 2020
2
November, 2020
Available data
287
fastq
282
bam
272
bigWig
142
bed narrowPeak
89
tsv
85
tagAlign
42
bigBed narrowPeak
41
bed broadPeak
33
bed bed3+
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
142
Homo sapiens
Biosample type
71
tissue
43
in vitro differentiated cells
34
primary cell
Organ
49
pancreas
48
connective tissue
19
liver
17
epithelium
15
musculature of body
5
adipose tissue
Project
148
AMP
Genome assembly (visualization)
146
hg19
120
GRCh38
Lab
148
AMP-T2D consortium
Audit category:
1
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
BIOSAMPLE
ASSAY
148 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
RRBS
WGBS
FAIRE-seq
tissue
islet of Langerhans
18
1
1
liver
17
1
skeletal muscle tissue
13
2
pancreas
12
adipose tissue
1
2
+ See 3 more…
in vitro differentiated cells
adipocyte
42
1
primary cell
skeletal muscle myoblast
14
2
1
pancreatic alpha cell
7
1
pancreatic beta cell
7
1
pancreatic acinar cell
1
See all biosamples
Download