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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
57
ChIP-seq
29
DNase-seq
22
ATAC-seq
10
RRBS
1
FAIRE-seq
Assay category
57
DNA binding
52
DNA accessibility
10
DNA methylation
Target of assay
47
histone
47
histone modification
26
narrow histone mark
21
broad histone mark
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
47
June, 2019
20
August, 2017
14
September, 2018
13
October, 2019
9
July, 2019
6
November, 2017
5
September, 2017
4
May, 2019
1
November, 2020
Available data
613
bigWig
609
bam
409
fastq
295
bed narrowPeak
270
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
119
Homo sapiens
Biosample type
586
tissue
356
cell line
119
primary cell
17
in vitro differentiated cells
Organ
67
epithelium
22
pancreas
22
vasculature
19
kidney
17
blood vessel
16
connective tissue
13
vein
12
brain
10
musculature of body
7
heart
4
eye
3
liver
Project
119
AMP
Genome assembly (visualization)
112
hg19
105
GRCh38
Lab
119
AMP-T2D consortium
Audit category:
25
inconsistent ontology term
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
BIOSAMPLE
ASSAY
119 results
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ChIP-seq
DNase-seq
ATAC-seq
RRBS
FAIRE-seq
primary cell
skeletal muscle myoblast
14
2
1
endothelial cell of umbilical vein
10
2
1
cardiac fibroblast
3
3
1
pancreatic beta cell
7
skeletal muscle satellite cell
7
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