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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
Hi-C
17
RRBS
17
WGBS
Assay category
34
DNA methylation
18
3D chromatin structure
Date released
21
July, 2019
8
March, 2020
7
November, 2018
6
August, 2017
3
October, 2022
2
August, 2021
2
October, 2019
1
March, 2019
1
March, 2023
1
November, 2019
Available data
3180
bam
2937
bigWig
1714
bed narrowPeak
1450
tsv
1347
fastq
1018
bigBed narrowPeak
395
tagAlign
318
bed broadPeak
281
bigBed broadPeak
267
bed bed3+
153
zippedFastqFolder
76
txt
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
18
hic
16
bedpe bed3+
12
bed bed3
8
csv
6
bed bedgraph
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
52
Homo sapiens
Biosample type
36
tissue
14
primary cell
2
cell line
Organ
12
pancreas
10
epithelium
10
heart
6
musculature of body
5
liver
5
vasculature
4
blood vessel
4
kidney
2
adipose tissue
2
brain
2
connective tissue
2
spleen
2
vein
1
eye
1
limb
1
pericardium
Project
48
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
34
hg19
18
GRCh38
Lab
45
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
inconsistent ontology term
4
audit script error
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
52 results
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Clear Filters
Hi-C
RRBS
WGBS
tissue
heart left ventricle
1
1
2
pancreas
1
1
2
heart right ventricle
1
2
islet of Langerhans
2
1
adipose tissue
2
+ See 12 more…
primary cell
endothelial cell of umbilical vein
2
cardiac muscle cell
1
chondrocytes
1
choroid plexus epithelial cell
1
hepatocyte
1
+ See 8 more…
cell line
HepG2
1
1
See all biosamples
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