Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
58
WGBS
52
single cell RNA-seq
39
ATAC-seq
23
Hi-C
21
snATAC-seq
19
RRBS
Assay category
77
DNA methylation
60
DNA accessibility
52
Transcription
23
3D chromatin structure
Date released
134
May, 2022
23
July, 2019
19
September, 2020
10
March, 2020
7
November, 2018
6
August, 2017
4
October, 2019
3
October, 2022
2
August, 2021
2
November, 2019
1
March, 2019
1
March, 2023
Available data
3392
bam
3129
bigWig
1777
bed narrowPeak
1600
tsv
1358
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
212
Homo sapiens
Biosample type
169
primary cell
36
tissue
4
in vitro differentiated cells
3
cell line
Organ
93
pancreas
92
epithelium
11
heart
6
musculature of body
5
kidney
5
liver
5
vasculature
4
blood vessel
3
connective tissue
2
adipose tissue
2
brain
2
spleen
2
vein
1
eye
1
limb
1
pericardium
Project
156
HPAP
55
AMP
1
ITG
Genome assembly (visualization)
41
hg19
18
GRCh38
Lab
156
Klaus Kaestner, Upenn
52
AMP-T2D consortium
2
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
7
inconsistent ontology term
4
audit script error
BIOSAMPLE
ASSAY
212 results
search-icon
table-tab-icon
Clear Filters
WGBS
single cell RNA-seq
ATAC-seq
Hi-C
snATAC-seq
RRBS
primary cell
Langerhans cell
52
21
pancreatic alpha cell
25
22
1
pancreatic beta cell
16
13
1
pancreatic acinar cell
4
1
endothelial cell of umbilical vein
2
+ See 11 more…
tissue
heart left ventricle
2
1
1
pancreas
2
1
1
heart right ventricle
2
1
islet of Langerhans
2
1
adipose tissue
2
+ See 12 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
cell line
HepG2
1
1
EndoC_BH1
1
See all biosamples
Download