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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
59
total RNA-seq
19
RRBS
17
WGBS
13
single cell RNA-seq
1
MPRA
Assay category
72
Transcription
36
DNA methylation
DNA accessibility
Date released
89
February, 2021
57
August, 2021
23
July, 2019
7
November, 2018
6
August, 2017
6
May, 2022
4
February, 2023
1
October, 2022
Available data
3003
bam
2779
bigWig
1586
tsv
1285
bed narrowPeak
1256
fastq
801
bigBed narrowPeak
398
tagAlign
157
txt
114
bed broadPeak
93
zippedFastqFolder
79
bigBed broadPeak
64
bed bed3+
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
8
csv
5
hdf5
3
cool
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
192
Homo sapiens
Biosample type
181
tissue
10
primary cell
2
cell line
Organ
88
bone element
66
kidney
12
pancreas
8
heart
6
epithelium
4
musculature of body
4
skeleton
3
connective tissue
3
liver
2
adipose tissue
2
brain
2
spleen
2
vasculature
1
blood vessel
1
eye
1
limb
1
pericardium
Project
193
AMP
Genome assembly (visualization)
19
hg19
17
GRCh38
Lab
130
AMP-T2D consortium
57
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
Audit category:
86
inconsistent ontology term
5
audit script error
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
193 results
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Clear Filters
RNA microarray
total RNA-seq
RRBS
WGBS
single cell RNA-seq
MPRA
tissue
bone element
84
kidney
49
1
13
islet of Langerhans
6
1
heart left ventricle
1
2
pancreas
1
2
+ See 16 more…
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
+ See 5 more…
cell line
HepG2
1
MIN6
1
See all biosamples
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