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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ATAC-seq
19
RRBS
17
WGBS
5
Hi-C
Assay category
64
DNA accessibility
36
DNA methylation
5
3D chromatin structure
Date released
64
August, 2021
27
July, 2019
7
November, 2018
6
August, 2017
1
October, 2019
Available data
3392
bam
3129
bigWig
1777
bed narrowPeak
1600
tsv
1358
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
105
Homo sapiens
Biosample type
89
tissue
14
primary cell
2
cell line
Organ
68
kidney
8
epithelium
8
heart
7
pancreas
5
brain
4
connective tissue
4
liver
4
musculature of body
4
vasculature
3
blood vessel
2
adipose tissue
2
spleen
1
eye
1
limb
1
pericardium
Project
105
AMP
Genome assembly (visualization)
82
GRCh38
24
hg19
Lab
64
Katalin Susztak, Upenn
41
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
1
inconsistent assembly
BIOSAMPLE
ASSAY
105 results
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ATAC-seq
RRBS
WGBS
Hi-C
tissue
kidney
64
1
heart left ventricle
1
2
pancreas
1
2
adipose tissue
2
body of pancreas
2
+ See 11 more…
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
cardiac fibroblast
1
cardiac muscle cell
1
+ See 9 more…
cell line
HepG2
1
Panc1
1
See all biosamples
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