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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ATAC-seq
17
RRBS
17
WGBS
Assay category
64
DNA accessibility
34
DNA methylation
Date released
64
August, 2021
21
July, 2019
7
November, 2018
6
August, 2017
Available data
3149
bam
2907
bigWig
1574
bed narrowPeak
1574
tsv
1337
fastq
915
bigBed narrowPeak
280
tagAlign
275
bed broadPeak
247
bigBed broadPeak
238
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
23
bedpe bed3+
23
hic
11
bed bed3
8
csv
7
bed bedgraph
4
tar
3
cool
2
hdf5
2
ibed
1
bedpe
1
vcf
Organism
98
Homo sapiens
Biosample type
88
tissue
9
primary cell
1
cell line
Organ
68
kidney
8
heart
6
epithelium
6
pancreas
4
musculature of body
3
connective tissue
3
liver
2
adipose tissue
brain
2
spleen
2
vasculature
1
blood vessel
1
eye
1
limb
1
pericardium
Project
98
AMP
Genome assembly (visualization)
81
GRCh38
17
hg19
Lab
64
Katalin Susztak, Upenn
34
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
organ_slims!
brain
BIOSAMPLE
ASSAY
98 results
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Clear Filters
ATAC-seq
RRBS
WGBS
tissue
kidney
64
1
heart left ventricle
1
2
pancreas
1
2
adipose tissue
2
body of pancreas
2
+ See 10 more…
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
kidney epithelial cell
1
+ See 4 more…
cell line
HepG2
1
See all biosamples
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