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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
DNase-seq
79
ChIP-seq
18
RRBS
15
WGBS
Assay category
197
DNA accessibility
79
DNA binding
33
DNA methylation
Target of assay
49
transcription factor
30
histone
30
histone modification
16
broad histone mark
14
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
181
June, 2019
64
November, 2017
22
July, 2019
18
August, 2017
15
November, 2018
9
October, 2019
Available data
2799
bam
2559
bigWig
1702
bed narrowPeak
1257
fastq
1122
tsv
1014
bigBed narrowPeak
376
tagAlign
312
bed broadPeak
276
bigBed broadPeak
246
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
33
bed bedMethyl
33
bigBed bedMethyl
23
hic
22
bedpe bed3+
8
csv
6
bed bed3
4
hdf5
4
tar
3
bed bedgraph
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
309
Homo sapiens
Biosample type
197
tissue
60
cell line
52
primary cell
Organ
82
kidney
66
liver
40
brain
38
heart
37
limb
37
musculature of body
28
epithelium
19
vasculature
18
ureter
14
blood vessel
13
pancreas
connective tissue
5
eye
4
adipose tissue
4
artery
4
vein
3
spleen
2
nerve
1
pericardium
Project
309
AMP
Genome assembly (visualization)
273
GRCh38
272
hg19
Lab
309
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
13
inconsistent control read length
1
inconsistent assembly
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
309 results
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DNase-seq
ChIP-seq
RRBS
WGBS
tissue
heart
18
1
muscle of arm
17
brain
14
1
kidney
13
1
muscle of leg
13
1
+ See 43 more…
cell line
HepG2
58
1
Panc1
1
primary cell
skeletal muscle myoblast
1
13
1
choroid plexus epithelial cell
1
2
1
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
+ See 14 more…
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