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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
RRBS
15
WGBS
12
ATAC-seq
Assay category
33
DNA methylation
12
DNA accessibility
Date released
20
July, 2019
10
February, 2023
7
November, 2018
6
August, 2017
2
February, 2021
Available data
3119
bam
2944
bigWig
1613
bed narrowPeak
1526
tsv
1352
fastq
895
bigBed narrowPeak
392
tagAlign
271
bed broadPeak
234
bigBed broadPeak
226
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
33
bed bedMethyl
33
bigBed bedMethyl
21
bedpe bed3+
20
hic
12
bed bed3
8
csv
7
bed bedgraph
3
cool
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
45
Homo sapiens
Biosample type
28
tissue
10
primary cell
5
in vitro differentiated cells
2
cell line
Organ
9
connective tissue
8
heart
6
epithelium
6
pancreas
4
bone element
4
kidney
4
liver
4
musculature of body
4
skeleton
3
brain
2
adipose tissue
2
spleen
vasculature
1
blood vessel
1
eye
limb
1
pericardium
Project
45
AMP
Genome assembly (visualization)
30
hg19
17
GRCh38
Lab
45
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
1
inconsistent replicate
organ_slims!
limb
vasculature
BIOSAMPLE
ASSAY
45 results
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RRBS
WGBS
ATAC-seq
tissue
heart left ventricle
1
2
pancreas
1
2
adipose tissue
2
body of pancreas
2
brain
1
1
+ See 13 more…
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
kidney epithelial cell
1
+ See 5 more…
in vitro differentiated cells
chondrocyte
5
cell line
HepG2
1
1
See all biosamples
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