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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
21
ChIP-seq
7
ATAC-seq
Assay category
21
DNA binding
7
DNA accessibility
Target of assay
21
histone
21
histone modification
12
broad histone mark
9
narrow histone mark
Date released
20
August, 2017
4
February, 2021
3
February, 2023
1
November, 2017
Available data
bam
407
fastq
239
bigWig
200
tsv
185
bed narrowPeak
161
txt
153
zippedFastqFolder
152
tagAlign
44
bigBed narrowPeak
40
bed broadPeak
23
bedpe bed3+
22
hic
19
bed bedMethyl
19
bigBed bedMethyl
18
bigBed broadPeak
15
bed bed3+
10
bed bed3
8
csv
7
bed bedgraph
4
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
vcf
Organism
28
Homo sapiens
Biosample type
21
tissue
7
in vitro differentiated cells
Organ
13
musculature of body
6
pancreas
5
connective tissue
1
adipose tissue
1
brain
Project
28
AMP
Genome assembly (visualization)
29
hg19
GRCh38
Lab
25
AMP-T2D consortium
3
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
files.file_type!
bam
assembly!
GRCh38
BIOSAMPLE
ASSAY
28 results
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ChIP-seq
ATAC-seq
tissue
skeletal muscle tissue
13
islet of Langerhans
6
cingulate gyrus
1
subcutaneous abdominal adipose tissue
1
in vitro differentiated cells
adipocyte
4
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
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