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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
7
ATAC-seq
6
Hi-C
Assay category
7
DNA accessibility
6
3D chromatin structure
Date released
4
February, 2021
4
July, 2019
3
February, 2023
1
March, 2019
1
October, 2019
Available data
3392
bam
3129
bigWig
1777
bed narrowPeak
1600
tsv
1358
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
13
Homo sapiens
Biosample type
7
in vitro differentiated cells
4
primary cell
1
cell line
1
tissue
Organ
5
connective tissue
3
brain
2
blood vessel
2
epithelium
2
pancreas
2
vasculature
1
liver
Project
13
AMP
Genome assembly (visualization)
13
hg19
1
GRCh38
Lab
9
AMP-T2D consortium
3
Struan F.A. Grant, CHOP
1
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
Audit category:
1
inconsistent assembly
BIOSAMPLE
ASSAY
13 results
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Clear Filters
ATAC-seq
Hi-C
in vitro differentiated cells
adipocyte
4
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
endothelial cell of hepatic sinusoid
1
cell line
Panc1
1
tissue
islet of Langerhans
1
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