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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
112
ChIP-seq
Assay category
DNA accessibility
112
DNA binding
Target of assay
63
histone
63
histone modification
49
transcription factor
34
broad histone mark
29
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
70
November, 2017
39
August, 2017
3
October, 2017
October, 2019
Available data
2768
bam
2586
bigWig
1570
tsv
1256
fastq
1111
bed narrowPeak
743
bigBed narrowPeak
349
tagAlign
157
txt
112
bed broadPeak
93
zippedFastqFolder
77
bigBed broadPeak
63
bed bed3+
36
bed bedMethyl
36
bigBed bedMethyl
20
bedpe bed3+
19
hic
8
csv
4
hdf5
3
cool
3
tar
2
ibed
1
bedpe
1
vcf
Organism
106
Homo sapiens
Biosample type
58
cell line
35
tissue
19
primary cell
Organ
58
liver
15
brain
13
musculature of body
12
pancreas
4
epithelium
4
vasculature
2
blood vessel
1
adipose tissue
1
connective tissue
Project
112
AMP
Genome assembly (visualization)
112
hg19
76
GRCh38
Lab
112
AMP-T2D consortium
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
2
inconsistent assembly
assay_slims!
DNA accessibility
month_released!
October, 2019
BIOSAMPLE
ASSAY
112 results
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ChIP-seq
cell line
HepG2
58
tissue
skeletal muscle tissue
13
islet of Langerhans
6
pancreas
6
brain
3
cingulate gyrus
2
+ See 4 more…
primary cell
skeletal muscle myoblast
13
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
See all biosamples
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