Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
101
ChIP-seq
Assay category
DNA accessibility
101
DNA binding
Target of assay
52
histone
52
histone modification
49
transcription factor
28
broad histone mark
24
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
70
November, 2017
26
August, 2017
3
October, 2017
2
October, 2019
Available data
2979
bam
2745
bigWig
1577
tsv
1258
bed narrowPeak
1254
fastq
787
bigBed narrowPeak
383
tagAlign
157
txt
101
bed broadPeak
93
zippedFastqFolder
79
bigBed broadPeak
64
bed bed3+
32
bed bedMethyl
32
bigBed bedMethyl
21
bedpe bed3+
21
hic
8
csv
5
hdf5
3
cool
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
95
Homo sapiens
Biosample type
58
cell line
22
tissue
21
primary cell
Organ
58
liver
15
brain
musculature of body
12
pancreas
6
epithelium
6
vasculature
4
blood vessel
2
vein
1
adipose tissue
1
connective tissue
Project
101
AMP
Genome assembly (visualization)
101
hg19
76
GRCh38
Lab
101
AMP-T2D consortium
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
2
inconsistent assembly
assay_slims!
DNA accessibility
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
101 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
cell line
HepG2
58
tissue
islet of Langerhans
6
pancreas
6
brain
3
cingulate gyrus
2
middle frontal area 46
2
+ See 3 more…
primary cell
skeletal muscle myoblast
13
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
endothelial cell of umbilical vein
2
See all biosamples
Download