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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
112
ChIP-seq
Assay category
208
DNA accessibility
112
DNA binding
Target of assay
63
histone
63
histone modification
49
transcription factor
34
broad histone mark
29
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
70
November, 2017
37
August, 2017
3
October, 2017
2
October, 2019
Available data
1575
bam
1347
bigWig
1282
bed narrowPeak
854
fastq
798
bigBed narrowPeak
396
tagAlign
112
bed broadPeak
78
bigBed broadPeak
53
bed bed3+
3
tar
1
tagAlign bed3+
Organism
107
Homo sapiens
Biosample type
58
cell line
34
tissue
20
primary cell
Organ
58
liver
15
brain
13
musculature of body
11
pancreas
6
epithelium
6
vasculature
4
blood vessel
2
vein
1
adipose tissue
1
connective tissue
Project
112
AMP
Genome assembly (visualization)
112
hg19
74
GRCh38
Lab
112
AMP-T2D consortium
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
inconsistent assembly
audit.WARNING.category!
inconsistent assembly
BIOSAMPLE
ASSAY
112 results
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ChIP-seq
cell line
HepG2
58
tissue
skeletal muscle tissue
13
islet of Langerhans
6
pancreas
5
brain
3
cingulate gyrus
2
+ See 4 more…
primary cell
skeletal muscle myoblast
12
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
endothelial cell of umbilical vein
2
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