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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
DNase-seq
112
ChIP-seq
2
ATAC-seq
Assay category
112
DNA binding
2
DNA accessibility
Target of assay
63
histone
63
histone modification
49
transcription factor
34
broad histone mark
29
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
70
November, 2017
37
August, 2017
4
October, 2017
2
October, 2019
1
March, 2019
Available data
3180
bam
2916
bigWig
1600
tsv
1565
bed narrowPeak
1343
fastq
830
bigBed narrowPeak
396
tagAlign
161
txt
153
zippedFastqFolder
114
bed broadPeak
78
bigBed broadPeak
68
bed bed3+
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
4
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
109
Homo sapiens
Biosample type
58
cell line
36
tissue
20
primary cell
Organ
58
liver
15
brain
13
musculature of body
13
pancreas
6
epithelium
6
vasculature
4
blood vessel
2
vein
1
adipose tissue
1
connective tissue
Project
114
AMP
Genome assembly (visualization)
113
hg19
75
GRCh38
Lab
112
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
inconsistent assembly
assay_title!
DNase-seq
audit.WARNING.category!
inconsistent assembly
BIOSAMPLE
ASSAY
114 results
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Clear Filters
ChIP-seq
ATAC-seq
cell line
HepG2
58
tissue
skeletal muscle tissue
13
islet of Langerhans
6
2
pancreas
5
brain
3
cingulate gyrus
2
+ See 4 more…
primary cell
skeletal muscle myoblast
12
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
endothelial cell of umbilical vein
2
See all biosamples
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