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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
DNase-seq
113
ChIP-seq
2
ATAC-seq
Assay category
113
DNA binding
2
DNA accessibility
Target of assay
64
histone
64
histone modification
49
transcription factor
36
broad histone mark
28
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
70
November, 2017
38
August, 2017
4
October, 2017
2
October, 2019
1
March, 2019
Available data
2743
bam
2497
bigWig
1557
bed narrowPeak
1303
fastq
1199
tsv
825
bigBed narrowPeak
390
tagAlign
161
txt
153
zippedFastqFolder
115
bed broadPeak
79
bigBed broadPeak
65
bed bed3+
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
23
hic
22
bedpe bed3+
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
109
Homo sapiens
Biosample type
58
cell line
36
tissue
21
primary cell
Organ
58
liver
15
brain
14
pancreas
13
musculature of body
6
epithelium
6
vasculature
4
blood vessel
2
vein
adipose tissue
1
connective tissue
Project
115
AMP
Genome assembly (visualization)
114
hg19
77
GRCh38
Lab
113
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
2
inconsistent assembly
assay_title!
DNase-seq
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
115 results
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Clear Filters
ChIP-seq
ATAC-seq
cell line
HepG2
58
tissue
skeletal muscle tissue
13
islet of Langerhans
6
2
pancreas
6
brain
3
cingulate gyrus
2
+ See 3 more…
primary cell
skeletal muscle myoblast
13
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
endothelial cell of umbilical vein
2
See all biosamples
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