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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
177
DNase-seq
91
ChIP-seq
2
ATAC-seq
Assay category
179
DNA accessibility
91
DNA binding
Target of assay
47
histone
47
histone modification
44
transcription factor
27
broad histone mark
20
narrow histone mark
4
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
162
June, 2019
64
November, 2017
27
August, 2017
9
November, 2018
5
October, 2019
2
October, 2017
1
March, 2019
Available data
2572
bam
2360
bigWig
1468
bed narrowPeak
1197
tsv
917
bigBed narrowPeak
900
fastq
291
tagAlign
270
bed broadPeak
235
bigBed broadPeak
219
bed bed3+
76
txt
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
12
bedpe bed3+
12
hic
11
bed bed3
6
bed bedgraph
6
csv
3
tar
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
264
Homo sapiens
Biosample type
210
tissue
59
cell line
primary cell
1
in vitro differentiated cells
Organ
68
kidney
61
liver
44
musculature of body
35
limb
34
brain
27
heart
21
pancreas
18
ureter
5
blood vessel
5
vasculature
4
artery
4
connective tissue
3
adipose tissue
3
eye
2
nerve
1
spleen
Project
270
AMP
Genome assembly (visualization)
253
hg19
234
GRCh38
Lab
268
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
13
inconsistent control read length
1
inconsistent assembly
audit.NOT_COMPLIANT.category!
missing controlled_by
audit.ERROR.category!
inconsistent ontology term
biosample_type!
primary cell
BIOSAMPLE
ASSAY
270 results
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DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
muscle of arm
17
brain
14
1
kidney
13
skeletal muscle tissue
13
+ See 45 more…
cell line
HepG2
58
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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